PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g27770.1.p
Common NameBRADI_4g27770, LOC100827809
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 346aa    MW: 37313.3 Da    PI: 7.4309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g27770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05153172120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C  C+ksF+r  n++ H+
  Bradi4g27770.1.p 153 FSCAVCNKSFNRFNNMQMHM 172
                       89*****************9 PP

2zf-C2H213.70.00018250272123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C  Cgk+F  + + ++H +++
  Bradi4g27770.1.p 250 YACRRCGKRFAVRGDWRTHEKNC 272
                       89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-5149176No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5153172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.72153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM00355220213245IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6236270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-6236270No hitNo description
PROSITE profilePS501578.704250270IPR007087Zinc finger, C2H2
SMARTSM0035558250270IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MHSYRAMHPY HPAPAAAASS KQQAEEDDQS MLLLSLWPPG HHDASSSSHS AASSCSPSWF  60
ISSHYNNGGG GAGGGAGGFM FHDQQQPVVV DHPNVSVSLS IAPPCAGAPN NLQAAGGSMS  120
FAAPPSSPSL QQQQPSQYWI PSAAEILVGS TQFSCAVCNK SFNRFNNMQM HMWGHGSQYR  180
KGSDSLRGAV TTTTTTTTAA LTPPPSLMRL PCYCCAEGCR NNIDHPRARP LKDFRTLQTH  240
YRRKHGARPY ACRRCGKRFA VRGDWRTHEK NCGKLWFCVC GSDFKHKRSL KDHVRSFGGG  300
HAPHIVESSS VGAVDDDEDY DDDDGDLLQH DDNANAGEGS DMILA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732991e-134AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576402.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX682e-99ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLI1IPA30.0I1IPA3_BRADI; Uncharacterized protein
STRINGBRADI4G27770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.18e-91C2H2-like zinc finger protein